Improving free-energy estimates from unidirectional work measurements: theory and experiment
arXiv:1108.0605 · doi:10.1103/PhysRevLett.107.060601
Abstract
We derive analytical expressions for the bias of the Jarzynski free-energy estimator from N nonequilibrium work measurements, for a generic work distribution. To achieve this, we map the estimator onto the Random Energy Model in a suitable scaling limit parametrized by (log N)/m, where m measures the width of the lower tail of the work distribution, and then compute the finite-N corrections to this limit with different approaches for different regimes of (log N)/m. We show that these expressions describe accurately the bias for a wide class of work distributions, and exploit them to build an improved free-energy estimator from unidirectional work measurements. We apply the method to optical tweezers unfolding/refolding experiments on DNA hairpins of varying loop size and dissipation, displaying both near-Gaussian and non-Gaussian work distributions.
4 pages, 3 figures
References in corpus (4)
- Rare events and the convergence of exponentially averaged work values
- Single-molecule derivation of salt dependent base-pair free energies in DNA
- Improving signal-to-noise resolution in single molecule experiments using molecular constructs with short handles
- Improving free-energy estimates from unidirectional work measurements: theory and experiment
Cited by in corpus (22)
- Stochastic thermodynamics, fluctuation theorems, and molecular machines
- Experimental free energy measurements of kinetic molecular states using fluctuation theorems
- Improving free-energy estimates from unidirectional work measurements: theory and experiment
- Measuring Rényi entanglement entropy with high efficiency and precision in quantum Monte Carlo simulations
- Convergence of large deviation estimators
- Molten globule-like transition state of protein barnase measured with calorimetric force spectroscopy
- Stem-loop formation drives RNA folding in mechanical unzipping experiments
- Probing small-scale intermittency with a fluctuation theorem
- Free energy inference from partial work measurements in small systems
- Comparison of free energy estimators and their dependence on dissipated work
- Quantum Work Fluctuations in connection with Jarzynski Equality
- Dissipation reduction and information-to-measurement conversion in DNA pulling experiments with feedback protocols
- Statistics of work performed by optical tweezers with general time-variation of their stiffness
- Phase transition in the Jarzynski estimator of free energy differences
- Statistical work-energy theorems in deterministic dynamics
- Force Dependence of Proteins' Transition State Position and the Bell-Evans Model
- Convergence of the Integral Fluctuation Theorem estimator for nonequilibrium Markov systems
- Dynamics and energetics of a molecular zipper under external driving
- On asymptotic behavior of work distributions for driven Brownian motion
- Asymptotic work distributions in driven bistable systems
- Experimentally accessible measurement of irreversibility in stochastic systems by categorizing single-molecule displacements
- Entropic bonding of the type 1 pilus from experiment and simulation