Mean Field Theory For Non-Equilibrium Network Reconstruction
arXiv:1009.5946 · doi:10.1103/PhysRevLett.106.048702
Abstract
There has been recent progress on the problem of inferring the structure of interactions in complex networks when they are in stationary states satisfying detailed balance, but little has been done for non-equilibrium systems. Here we introduce an approach to this problem, considering, as an example, the question of recovering the interactions in an asymmetrically-coupled, synchronously-updated Sherrington-Kirkpatrick model. We derive an exact iterative inversion algorithm and develop efficient approximations based on dynamical mean-field and Thouless-Anderson-Palmer equations that express the interactions in terms of equal-time and one time step-delayed correlation functions.
new version, accepted in PRL. For the Supp. Mat. (ref. 11), please contact the authors
References in corpus (6)
- Weak pairwise correlations imply strongly correlated network states in a neural population
- Identification of direct residue contacts in protein-protein interaction by message passing
- High-dimensional Ising model selection using -regularized logistic regression
- The Ising Model for Neural Data: Model Quality and Approximate Methods for Extracting Functional Connectivity
- Prediction of spatio-temporal patterns of neural activity from pairwise correlations
- Dynamical TAP approach to mean field glassy systems
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