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20082026
most citedHeterogeneous Parallelization and Acceleration of Molecular Dynamics Simulations in GROMACS

966 citations

Showing physics.comp-phShow all

6 papers · 1 filter

physics.comp-ph2023★ 4 cited

Metaheuristic conditional neural network for harvesting skyrmionic metastable states

Qichen Xu, I. P. Miranda, Manuel Pereiro +8

We present a metaheuristic conditional neural-network-based method aimed at identifying physically interesting metastable states in a potential energy surface of high rugosity. To…

physics.comp-ph2023★ 2 cited

Genetic-tunneling driven energy optimizer for spin systems

Qichen Xu, Zhuanglin Shen, Manuel Pereiro +3

A long-standing and difficult problem in, e.g., condensed matter physics is how to find the ground state of a complex many-body system where the potential energy surface has a larg…

physics.comp-ph2020★ 966 cited

Heterogeneous Parallelization and Acceleration of Molecular Dynamics Simulations in GROMACS

Szilárd Páll, Artem Zhmurov, Paul Bauer +5

The introduction of accelerator devices such as graphics processing units (GPUs) has had profound impact on molecular dynamics simulations and has enabled order-of-magnitude perfor…

physics.comp-ph2019★ 112 cited

A volume-of-fluid method for interface-resolved simulations of phase-changing two-fluid flows

Nicolò Scapin, Pedro Costa, Luca Brandt

We present a numerical method for interface-resolved simulations of evaporating two-fluid flows based on the volume-of-fluid (VoF) method. The method has been implemented in an eff…

physics.comp-ph2017★ 34 cited

Extended spin model in atomistic simulations of alloys

Fan Pan, Jonathan Chico, Anna Delin +2

An extended atomistic spin model allowing for studies of the finite temperature magnetic properties of alloys is proposed. The model is obtained by extending the Heisenberg Hamilto…

physics.comp-ph2013★ 779 cited

A flexible algorithm for calculating pair interactions on SIMD architectures

Szilárd Páll, Berk Hess

Calculating interactions or correlations between pairs of particles is typically the most time-consuming task in particle simulation or correlation analysis. Straightforward implem…