164 citations
Counting papers with at most 25 authors, so collaboration author lists do not stand in for the people here.
- Scuola Internazionale Superiore di Studi AvanzatiIT7 papers
- Czech Academy of SciencesCZ6 papers
- Palacký University OlomoucCZ5 papers
- Regional Centre of Advanced Technologies and MaterialsCZ5 papers
- Centre National de la Recherche ScientifiqueFR3 papers
- Central European Institute of Technology – Masaryk UniversityCZ2 papers
- Czech Academy of Sciences, Heyrovsky InstituteCZ2 papers
- Heidelberg UniversityDE2 papers
- InsermFR2 papers
- Lyon 1 UniversitéFR2 papers
- Masaryk UniversityCZ2 papers
- Technical University of MunichDE2 papers
3 papers · 2 filters
Folding of guanine quadruplex molecules -- funnel-like mechanism or kinetic partitioning? An overview from MD simulation studies
Jiří Šponer, Giovanni Bussi, Petr Stadlbauer +6
Background: Guanine quadruplexes (GQs) play vital roles in many cellular processes and are of much interest as drug targets. In contrast to the availability of many structural stud…
Computer Folding of RNA Tetraloops: Identification of Key Force Field Deficiencies
Petra Kührová, Robert B. Best, Sandro Bottaro +4
The computer-aided folding of biomolecules, particularly RNAs, is one of the most difficult challenges in computational structural biology. RNA tetraloops are fundamental RNA motif…
Free Energy Landscape of GAGA and UUCG RNA Tetraloops
Sandro Bottaro, Pavel Banáš, Jiri Sponer +1
We report the folding thermodynamics of ccUUCGgg and ccGAGAgg RNA tetraloops using atomistic molecular dynamics simulations. We obtain a previously unreported estimation of the fol…