activity
20122023
most citedComputer Folding of RNA Tetraloops: Identification of Key Force Field Deficiencies

164 citations · 647 across the 10 of their papers we have counts for

collaborators

10 papers

cond-mat.mtrl-sci2023★ 34 cited

Defect engineering over anisotropic brookite towards substrate-specific photo-oxidation of alcohols

S. M. Hossein Hejazi, Mahdi Shahrezaei, Piotr Błoński +11

Generally adopted design strategies for enhancing the photocatalytic activity are aimed at tuning properties such as the visible light response, the exposed crystal facets, and the…

cond-mat.mtrl-sci2022★ 33 cited

Graphene Lattices with Embedded Transition-Metal Atoms and Tunable Magnetic Anisotropy Energy: Implications for Spintronic Devices

Rostislav Langer, Kimmo Mustonen, Alexander Markevich +3

Doping of the graphene lattice with transition metal atoms resulting in high magnetic anisotropy energy (MAE) is an important goal of materials research owing to its potential appl…

physics.app-ph2019

Mechanistic insight into the limiting factors of graphene-based environmental sensors

Jean-Michel Guay, Ranjana Rautela, Samantha Scarfe +11

Graphene has demonstrated great promise for technological use, yet control over material growth and understanding of how material imperfections affect the performance of devices ar…

q-bio.BM2016★ 125 cited

Folding of guanine quadruplex molecules -- funnel-like mechanism or kinetic partitioning? An overview from MD simulation studies

Jiří Šponer, Giovanni Bussi, Petr Stadlbauer +6

Background: Guanine quadruplexes (GQs) play vital roles in many cellular processes and are of much interest as drug targets. In contrast to the availability of many structural stud…

q-bio.BM2016★ 164 cited

Computer Folding of RNA Tetraloops: Identification of Key Force Field Deficiencies

Petra Kührová, Robert B. Best, Sandro Bottaro +4

The computer-aided folding of biomolecules, particularly RNAs, is one of the most difficult challenges in computational structural biology. RNA tetraloops are fundamental RNA motif…

q-bio.BM2015★ 43 cited

Hairpins Participating in Folding of Human Telomeric Sequence Quadruplexes Studied by Standard and T-REMD Simulations

Petr Stadlbauer, Petra Kührová, Pavel Banáš +5

DNA G-hairpins are potential key structures participating in folding of human telomeric guanine quadruplexes (GQ). We examined their properties by standard MD simulations starting…