output
20172022
most citedPositive-unlabeled convolutional neural networks for particle picking in cryo-electron micrographs

1.9k citations

11 papers

q-bio.NC2022★ 48 cited

Dimension of activity in random neural networks

David G. Clark, L. F. Abbott, Ashok Litwin-Kumar

Neural networks are high-dimensional nonlinear dynamical systems that process information through the coordinated activity of many connected units. Understanding how biological and…

eess.IV2022★ 21 cited

Improving Across-Dataset Brain Tissue Segmentation Using Transformer

Vishwanatha M. Rao, Zihan Wan, Soroush Arabshahi +6

Brain tissue segmentation has demonstrated great utility in quantifying MRI data through Voxel-Based Morphometry and highlighting subtle structural changes associated with various…

cond-mat.stat-mech2020★ 70 cited

Feedback mechanisms for self-organization to the edge of a phase transition

Victor Buendía, Serena di Santo, Juan A. Bonachela +1

Scale-free outbursts of activity are commonly observed in physical, geological, and biological systems. The idea of self-organized criticality (SOC), introduced back in 1987 by Bak…

q-bio.NC2020★ 4 cited

Optimal Learning with Excitatory and Inhibitory synapses

Alessandro Ingrosso

Characterizing the relation between weight structure and input/output statistics is fundamental for understanding the computational capabilities of neural circuits. In this work, I…

q-bio.NC2020★ 106 cited

Going in circles is the way forward: the role of recurrence in visual inference

Ruben S. van Bergen, Nikolaus Kriegeskorte

Biological visual systems exhibit abundant recurrent connectivity. State-of-the-art neural network models for visual recognition, by contrast, rely heavily or exclusively on feedfo…

cond-mat.stat-mech2019★ 37 cited

Self-organized bistability and its possible relevance for brain dynamics

Victor Buendía, Serena di Santo, Pablo Villegas +2

Self-organized bistability (SOB) is the counterpart of 'self-organized criticality' (SOC), for systems tuning themselves to the edge of bistability of a discontinuous phase transit…

cond-mat.dis-nn2018★ 50 cited

Training dynamically balanced excitatory-inhibitory networks

Alessandro Ingrosso, L. F. Abbott

The construction of biologically plausible models of neural circuits is crucial for understanding the computational properties of the nervous system. Constructing functional networ…

q-bio.NC2018★ 3 cited

Interpreting Encoding and Decoding Models

Nikolaus Kriegeskorte, Pamela K. Douglas

Encoding and decoding models are widely used in systems, cognitive, and computational neuroscience to make sense of brain-activity data. However, the interpretation of their result…

q-bio.NC2018★ 1 cited

Cognitive computational neuroscience

Nikolaus Kriegeskorte, Pamela K. Douglas

To learn how cognition is implemented in the brain, we must build computational models that can perform cognitive tasks, and test such models with brain and behavioral experiments.…

q-bio.QM2018★ 1.9k cited

Positive-unlabeled convolutional neural networks for particle picking in cryo-electron micrographs

Tristan Bepler, Andrew Morin, Julia Brasch +3

Cryo-electron microscopy (cryoEM) is an increasingly popular method for protein structure determination. However, identifying a sufficient number of particles for analysis (often >…

cs.NE2017★ 141 cited

full-FORCE: A Target-Based Method for Training Recurrent Networks

Brian DePasquale, Christopher J. Cueva, Kanaka Rajan +2

Trained recurrent networks are powerful tools for modeling dynamic neural computations. We present a target-based method for modifying the full connectivity matrix of a recurrent n…