output
20022026
most citedMultilayer Networks

3.2k citations

Showing 2005Show all

22 papers · 1 filter

q-bio.PE2005

The importance of selection rate in the evolution of cooperation

Carlos P. Roca, Jose A. Cuesta, Angel Sanchez

How cooperation emerges in human societies is still a puzzle. Evolutionary game theory has been the standard framework to address this issue. In most models, every individual plays…

nlin.CG2005

Symmetry pattern transition in cellular automata with complex behavior

J. R. Sanchez, R. Lopez-Ruiz

A transition from asymmetric to symmetric patterns in time-dependent extended systems is described. It is found that one dimensional cellular automata, started from fully random in…

q-bio.QM2005★ 7 cited

Explicit factorization of external coordinates in constrained Statistical Mechanics models

Pablo Echenique, Ivan Calvo

If a macromolecule is described by curvilinear coordinates or rigid constraints are imposed, the equilibrium probability density that must be sampled in Monte Carlo simulations inc…

cond-mat.mes-hall2005★ 19 cited

Transport in chaotic quantum dots: effects of spatial symmetries which interchange the leads

Victor A. Gopar, Stefan Rotter, Henning Schomerus

We investigate the effect of spatial symmetries on phase coherent electronic transport through chaotic quantum dots. For systems which have a spatial symmetry that interchanges the…

cs.CC2005★ 1 cited

Phase transition in the assignment problem for random matrices

J. G. Esteve, F. Falceto

We report an analytic and numerical study of a phase transition in a P problem (the assignment problem) that separates two phases whose representatives are the simple matching prob…

cond-mat.supr-con2005★ 40 cited

Soliton ratchets in homogeneous nonlinear Klein-Gordon systems

Luis Morales-Molina, Niurka R. Quintero, Franz G. Mertens +1

We study in detail the ratchet-like dynamics of topological solitons in homogeneous nonlinear Klein-Gordon systems driven by a bi-harmonic force. By using a collective coordinate a…

q-bio.OT2005★ 7 cited

On the discrete Peyrard-Bishop model of DNA: stationary solutions and stability

Sara Cuenda, Angel Sanchez

As a first step in the search of an analytical study of mechanical denaturation of DNA in terms of the sequence, we study stable, stationary solutions in the discrete, finite and h…

q-bio.BM2005★ 16 cited

Definition of Systematic, Approximately Separable and Modular Internal Coordinates (SASMIC) for macromolecular simulation

Pablo Echenique, J. L. Alonso

A set of rules is defined to systematically number the groups and the atoms of organic molecules and, particularly, of polypeptides in a modular manner. Supported by this numeratio…

cond-mat.stat-mech2005★ 10 cited

Modelling Disorder: the Cases of Wetting and DNA Denaturation

Saul Ares, Angel Sanchez

We study the effect of the composition of the genetic sequence on the melting temperature of double stranded DNA, using some simple analytically solvable models proposed in the fra…

cond-mat.dis-nn2005★ 1 cited

Numerical Simulations of Random Phase Sine-Gordon Model and Renormalization Group Predictions

D. J. Lancaster, J. J. Ruiz-Lorenzo

Numerical Simulations of the random phase sine-Gordon model suffer from strong finite size effects preventing the non-Gaussian component of the spatial correlator from f…

cond-mat.mes-hall2005★ 21 cited

Statistical study of the conductance and shot noise in open quantum-chaotic cavities: Contribution from whispering gallery modes

Evgeny N. Bulgakov, Victor A. Gopar, Pier A. Mello +1

In the past, a maximum-entropy model was introduced and applied to the study of statistical scattering by chaotic cavities, when short paths may play an important role in the scatt…

cond-mat.mes-hall2005★ 31 cited

Symmetry and environment effects on rectification mechanisms in quantum pumps

Liliana Arrachea

We consider a paradigmatic model of quantum pumps and discuss its rectification properties in the framework of a symmetry analysis proposed for ratchet systems. We discuss the role…

physics.bio-ph2005★ 69 cited

Can one predict DNA Transcription Start Sites by studying bubbles?

Titus S. van Erp, Santiago Cuesta-Lopez, Johannes-Geert Hagmann +1

It has been speculated that bubble formation of several base-pairs due to thermal fluctuations is indicatory for biological active sites. Recent evidence, based on experiments and…

nlin.AO2005

A Model of Coupled-Maps for Economic Dynamics

J. R. Sanchez, R. Lopez-Ruiz

An array system of coupled maps is proposed as a model for economy evolution. The local dynamics of each map or agent is controlled by two parameters. One of them represents the gr…

cond-mat.stat-mech2005★ 15 cited

Numerical study of the enlarged O(5) symmetry of the 3-D antiferromagnetic RP2 spin model

L. A. Fernandez, V. Martin-Mayor, D. Sciretti +2

We investigate by means of Monte Carlo simulation and Finite-Size Scaling analysis the critical properties of the three dimensional O(5) non linear sigma model and of the antiferro…

physics.geo-ph2005★ 14 cited

A way to synchronize models with seismic faults for earthquake forecasting: Insights from a simple stochastic model

Alvaro Gonzalez, Miguel Vazquez-Prada, Javier B. Gomez +1

Numerical models are starting to be used for determining the future behaviour of seismic faults and fault networks. Their final goal would be to forecast future large earthquakes.…

cond-mat.mes-hall2005★ 39 cited

Quantum Monte Carlo method for models of molecular nanodevices

Liliana Arrachea, Marcelo J. Rozenberg

We introduce a quantum Monte Carlo technique to calculate exactly at finite temperatures the Green function of a fermionic quantum impurity coupled to a bosonic field. While the al…

cond-mat.mes-hall2005★ 124 cited

A Green-function approach to transport phenomena in quantum pumps

Liliana Arrachea

We present a general treatment to study transport phenomena in systems described by tight-binding Hamiltonians coupled to reservoirs and with one or more time-periodic potentials.…

nlin.CD2005★ 2 cited

Order in Binary Sequences and the Routes to Chaos

Ricardo Lopez-Ruiz

The natural order in the space of binary sequences permits to recover the -sequence. Also the scaling laws of the period-doubling cascade and the intermittency route to chaos de…

q-bio.QM2005★ 11 cited

A physically meaningful method for the comparison of potential energy functions

J. L. Alonso, Pablo Echenique

In the study of the conformational behavior of complex systems, such as proteins, several related statistical measures are commonly used to compare two different potential energy f…

cond-mat.soft2005★ 40 cited

On the critical behavior of the specific heat in glass-formers

L. A. Fernandez, V. Martin-Mayor, P. Verrocchio

We show numeric evidence that, at low enough temperatures, the potential energy density of a glass-forming liquid fluctuates over length scales much larger than the interaction ran…

physics.geo-ph2005★ 12 cited

The occupation of a box as a toy model for the seismic cycle of a fault

Alvaro Gonzalez, Javier B. Gomez, Amalio F. Pacheco

We illustrate how a simple statistical model can describe the quasiperiodic occurrence of large earthquakes. The model idealizes the loading of elastic energy in a seismic fault by…