715 citations
Counting papers with at most 25 authors, so collaboration author lists do not stand in for the people here.
- Universidade do PortoPT6 papers
- École Polytechnique Fédérale de LausanneCH3 papers
- INESC TECPT3 papers
- Allen Institute for Cell ScienceUS2 papers
- Carl Zeiss (Germany)DE2 papers
- Centre National de la Recherche ScientifiqueFR2 papers
- European Molecular Biology OrganizationDE2 papers
- Friedrich Miescher InstituteCH2 papers
- Institute for Systems Engineering and ComputersPT2 papers
- Instituto Gulbenkian de CiênciaPT2 papers
- Max Planck Institute of BiochemistryDE2 papers
- Max Planck Institute of Immunobiology and EpigeneticsDE2 papers
9 papers
MigraR: an open-source, R-based application for analysis and quantification of cell migration parameters
Nirbhaya Shajia, Florbela Nunes, M. Ines Rocha +2
Background and objective: Cell migration is essential for many biological phenomena with direct impact on human health and disease. One conventional approach to study cell migratio…
Community-developed checklists for publishing images and image analysis
Christopher Schmied, Michael Nelson, Sergiy Avilov +51
Images document scientific discoveries and are prevalent in modern biomedical research. Microscopy imaging in particular is currently undergoing rapid technological advancements. H…
Quantization for decentralized learning under subspace constraints
Roula Nassif, Stefan Vlaski, Marco Carpentiero +3
In this paper, we consider decentralized optimization problems where agents have individual cost functions to minimize subject to subspace constraints that require the minimizers a…
HEROHE Challenge: assessing HER2 status in breast cancer without immunohistochemistry or in situ hybridization
Eduardo Conde-Sousa, João Vale, Ming Feng +15
Breast cancer is the most common malignancy in women, being responsible for more than half a million deaths every year. As such, early and accurate diagnosis is of paramount import…
Modeling chronic pain experiences from online reports using the Reddit Reports of Chronic Pain dataset
Diogo A. P. Nunes, Joana Ferreira-Gomes, Fani Neto +1
Objective: Reveal and quantify qualities of reported experiences of chronic pain on social media, from multiple pathological backgrounds, by means of the novel Reddit Reports of Ch…
QUAREP-LiMi: A community-driven initiative to establish guidelines for quality assessment and reproducibility for instruments and images in light microscopy
Glyn Nelson, Ulrike Boehm, Steve Bagley +97
In April 2020, the QUality Assessment and REProducibility for Instruments and Images in Light Microscopy (QUAREP-LiMi) initiative was formed. This initiative comprises imaging scie…
Whole slide image registration for the study of tumor heterogeneity
Leslie Solorzano, Gabriela M. Almeida, Bárbara Mesquita +3
Consecutive thin sections of tissue samples make it possible to study local variation in e.g. protein expression and tumor heterogeneity by staining for a new protein in each secti…
BACH: Grand Challenge on Breast Cancer Histology Images
Guilherme Aresta, Teresa Araújo, Scotty Kwok +33
Breast cancer is the most common invasive cancer in women, affecting more than 10% of women worldwide. Microscopic analysis of a biopsy remains one of the most important methods to…
Backward stochastic differential equation approach to modeling of gene expression
Evelina Shamarova, Roman Chertovskih, Alexandre F. Ramos +1
In this article, we introduce a novel backward method to model stochastic gene expression and protein level dynamics. The protein amount is regarded as a diffusion process and is d…