13 citations · 20 across the 6 of their papers we have counts for
6 papers
Biological implications of symmetry in exact solutions for a self-repressing gene
Alexandre F. Ramos, John Reinitz
We chemically characterize the symmetries underlying the exact solutions of a stochastic negatively self-regulating gene. The breaking of symmetry at low molecular number causes th…
A stochastic model for gene transcription on Drosophila melanogaster embryos
Guilherme N. Prata, José Eduardo M. Hornos, Alexandre F. Ramos
We examine immunostaining experimental data for the formation of the strip 2 of () transcripts on embryos. An estimate of the factor convert…
Backward stochastic differential equation approach to modeling of gene expression
Evelina Shamarova, Roman Chertovskih, Alexandre F. Ramos +1
In this article, we introduce a novel backward method to model stochastic gene expression and protein level dynamics. The protein amount is regarded as a diffusion process and is d…
Comment on "Steady-state fluctuations of a genetic feedback loop: an exact solution" [J. Chem. Phys. {\bf 137}, 035104 (2012).]
Guilherme C. P. Innocentini, Alexandre F. Ramos, José Eduardo M. Hornos
The comment is intended to answer the criticism presented on `Steady-state fluctuations of a genetic feedback loop: an exact solution' [J. Chem. Phys. {\bf 137}, 035104 (2012).] an…
Noise reduction by coupling of stochastic processes and canalization in biology
Alexandre F. Ramos, Jose Eduardo M. Hornos, John Reinitz
Randomness is an unavoidable feature of the intracellular environment due to chemical reactants being present in low copy number. That phenomenon, predicted by Delbrück long ago \c…
On the bursting of gene products
Romain Yvinec, Alexandre F. Ramos
In this article we demonstrate that the so-called bursting production of molecular species during gene expression may be an artifact caused by low time resolution in experimental d…