BACH: Grand Challenge on Breast Cancer Histology Images
arXiv:1808.04277 · doi:10.1016/j.media.2019.05.010
Abstract
Breast cancer is the most common invasive cancer in women, affecting more than 10% of women worldwide. Microscopic analysis of a biopsy remains one of the most important methods to diagnose the type of breast cancer. This requires specialized analysis by pathologists, in a task that i) is highly time- and cost-consuming and ii) often leads to nonconsensual results. The relevance and potential of automatic classification algorithms using hematoxylin-eosin stained histopathological images has already been demonstrated, but the reported results are still sub-optimal for clinical use. With the goal of advancing the state-of-the-art in automatic classification, the Grand Challenge on BreAst Cancer Histology images (BACH) was organized in conjunction with the 15th International Conference on Image Analysis and Recognition (ICIAR 2018). A large annotated dataset, composed of both microscopy and whole-slide images, was specifically compiled and made publicly available for the BACH challenge. Following a positive response from the scientific community, a total of 64 submissions, out of 677 registrations, effectively entered the competition. From the submitted algorithms it was possible to push forward the state-of-the-art in terms of accuracy (87%) in automatic classification of breast cancer with histopathological images. Convolutional neuronal networks were the most successful methodology in the BACH challenge. Detailed analysis of the collective results allowed the identification of remaining challenges in the field and recommendations for future developments. The BACH dataset remains publically available as to promote further improvements to the field of automatic classification in digital pathology.
arXiv commentAccepted for publication at Medical Image Analysis (Elsevier). Publication licensed under the Creative Commons CC-BY-NC-ND 4.0 license http://creativecommons.org/licenses/by-nc-nd/4.0/
References in corpus (9)
- Adam: A Method for Stochastic Optimization
- Very Deep Convolutional Networks for Large-Scale Image Recognition
- Batch Normalization: Accelerating Deep Network Training by Reducing Internal Covariate Shift
- A Survey on Deep Learning in Medical Image Analysis
- Convolutional Neural Networks for Medical Image Analysis: Full Training or Fine Tuning?
- Squeeze-and-Excitation Networks
- Multi-Scale Context Aggregation by Dilated Convolutions
- Data Augmentation by Pairing Samples for Images Classification
- Hierarchical ResNeXt Models for Breast Cancer Histology Image Classification
Cited by in corpus (46)
- Deep neural network models for computational histopathology: A survey
- Artificial Intelligence for Digital and Computational Pathology
- A Comprehensive Review for Breast Histopathology Image Analysis Using Classical and Deep Neural Networks
- A Survey on Graph-Based Deep Learning for Computational Histopathology
- Multi-scale fully convolutional neural networks for histopathology image segmentation: from nuclear aberrations to the global tissue architecture
- Comparison of fine-tuning strategies for transfer learning in medical image classification
- A Comprehensive Analysis of Weakly-Supervised Semantic Segmentation in Different Image Domains
- Prediction of lung and colon cancer through analysis of histopathological images by utilizing Pre-trained CNN models with visualization of class activation and saliency maps
- MCUa: Multi-level Context and Uncertainty aware Dynamic Deep Ensemble for Breast Cancer Histology Image Classification
- Towards Label-efficient Automatic Diagnosis and Analysis: A Comprehensive Survey of Advanced Deep Learning-based Weakly-supervised, Semi-supervised and Self-supervised Techniques in Histopathological Image Analysis
- Multi-task pre-training of deep neural networks for digital pathology
- Quilt-1M: One Million Image-Text Pairs for Histopathology
- An End-to-End Breast Tumour Classification Model Using Context-Based Patch Modelling- A BiLSTM Approach for Image Classification
- HEROHE Challenge: assessing HER2 status in breast cancer without immunohistochemistry or in situ hybridization
- Deep Weakly-Supervised Learning Methods for Classification and Localization in Histology Images: A Survey
- Digital staining in optical microscopy using deep learning -- a review
- O-MedAL: Online Active Deep Learning for Medical Image Analysis
- Nuclei & Glands Instance Segmentation in Histology Images: A Narrative Review
- Efficient Quality Control of Whole Slide Pathology Images with Human-in-the-loop Training
- Robust Hypothesis Testing Using Wasserstein Uncertainty Sets
- Gigapixel Histopathological Image Analysis using Attention-based Neural Networks
- Semi-Supervised Histology Classification using Deep Multiple Instance Learning and Contrastive Predictive Coding
- Pan-tumor CAnine cuTaneous Cancer Histology (CATCH) dataset
- SOS: Selective Objective Switch for Rapid Immunofluorescence Whole Slide Image Classification
- How Much Off-The-Shelf Knowledge Is Transferable From Natural Images To Pathology Images?
- Visualization for Histopathology Images using Graph Convolutional Neural Networks
- Learning to segment images with classification labels
- Improving Generalization Capability of Deep Learning-Based Nuclei Instance Segmentation by Non-deterministic Train Time and Deterministic Test Time Stain Normalization
- Semantic Segmentation of Histopathological Slides for the Classification of Cutaneous Lymphoma and Eczema
- A Systematic Collection of Medical Image Datasets for Deep Learning
- Utilizing Automated Breast Cancer Detection to Identify Spatial Distributions of Tumor Infiltrating Lymphocytes in Invasive Breast Cancer
- Weakly Supervised Prostate TMA Classification via Graph Convolutional Networks
- Using Apple Machine Learning Algorithms to Detect and Subclassify Non-Small Cell Lung Cancer
- Unimodal Distributions for Ordinal Regression
- Tissue Concepts: supervised foundation models in computational pathology
- Leveraging Medical Foundation Model Features in Graph Neural Network-Based Retrieval of Breast Histopathology Images
- Joint Stream: Malignant Region Learning for Breast Cancer Diagnosis
- Histographs: Graphs in Histopathology
- DA-RefineNet:A Dual Input Whole Slide Image Segmentation Algorithm Based on Attention
- A Computer-Aided Diagnosis System for Breast Pathology: A Deep Learning Approach with Model Interpretability from Pathological Perspective
- Explanation and Use of Uncertainty Quantified by Bayesian Neural Network Classifiers for Breast Histopathology Images
- An Accelerated Pipeline for Multi-label Renal Pathology Image Segmentation at the Whole Slide Image Level
- OpenHI2 -- Open source histopathological image platform
- Effects of annotation granularity in deep learning models for histopathological images
- Weighted multi-level deep learning analysis and framework for processing breast cancer WSIs
- Microscopic fine-grained instance classification through deep attention