output
20022018
most citedOn the nonlinear dynamics of topological solitons in DNA

121 citations

5 papers

q-bio.QM2018

RKappa: Software for Analyzing Rule-Based Models

Anatoly Sorokin, Oksana Sorokina, J. Douglas Armstrong

RKappa is a framework for the development, simulation and analysis of rule-base models within the mature statistically empowered R environment. It is designed for model editing, pa…

cond-mat.soft2017★ 60 cited

Collective behavior of bulk nanobubbles produced by the alternating polarity electrolysis

Alexander V. Postnikov, Ilia V. Uvarov, Nikita V. Penkov +1

Nanobubbles in liquids are mysterious gaseous objects having exceptional stability. They promise a wide range of applications but their production is not well controlled and locali…

q-bio.BM2013★ 11 cited

Electrostatic map of T7 DNA. Comparative analysis of functional and electrostatic properties of T7 RNA polymerase specific promoters

S. G. Kamzolova, P. M. Beskaravainy, A. A. Osypov +3

The entire T7 bacteriophage genome contains 39937 base pairs (Database NCBI RefSeq N1001604). Here, electrostatic potential distribution around double helical T7 DNA was calculated…

q-bio.PE2012★ 30 cited

A mechanistic verification of the competitive exclusion principle

Lev V. Kalmykov, Vyacheslav L. Kalmykov

Biodiversity conservation becoming increasingly urgent. It is important to find mechanisms of competitive coexistence of species with different fitness in especially difficult circ…

physics.bio-ph2002★ 121 cited

On the nonlinear dynamics of topological solitons in DNA

L. V. Yakushevich, A. V. Savin, L. I. Manevitch

Dynamics of topological solitons describing open states in the DNA double helix are studied in the frameworks of the model which takes into account asymmetry of the helix. It is sh…