3 papers
q-bio.QM2018
RKappa: Software for Analyzing Rule-Based Models
Anatoly Sorokin, Oksana Sorokina, J. Douglas Armstrong
RKappa is a framework for the development, simulation and analysis of rule-base models within the mature statistically empowered R environment. It is designed for model editing, pa…
q-bio.MN2014
RKappa: Statistical sampling suite for Kappa models
Anatoly Sorokin, Oksana Sorokina, J. Douglas Armstrong
We present RKappa, a framework for the development and analysis of rule-based models within a mature, statistically empowered R environment. The infrastructure allows model editing…
q-bio.NC2014
Integration of rule-based models and compartmental models of neurons
David C. Sterratt, Oksana Sorokina, J. Douglas Armstrong
Synaptic plasticity depends on the interaction between electrical activity in neurons and the synaptic proteome, the collection of over 1000 proteins in the post-synaptic density (…