output
20132025
most citedSecond-generation PLINK: rising to the challenge of larger and richer datasets

14.3k citations

14 papers

physics.flu-dyn2025★ 1 cited

A Corrected Open Boundary Framework for Lattice Boltzmann Immiscible Pseudopotential Models

Yizhong Chen, Zhibin Wang

The pseudopotential lattice Boltzmann method (LBM) is a prominent approach for simulating multiphase flows, valued for its physical intuitiveness and computational tractability. Ho…

quant-ph2025★ 1 cited

Quantum-Classical Hybrid Computation of Electron Transfer in a Cryptochrome Protein via VQE-PDFT and Multiscale Modeling

Yibo Chen, Zirui Sheng, Weitang Li +4

Accurate calculation of strongly correlated electronic systems requires proper treatment of both static and dynamic correlations, which remains challenging for conventional methods…

quant-ph2025

Inference of maximum parsimony phylogenetic trees with model-based classical and quantum methods

Jiawei Zhang, Yibo Chen, Yang Zhou +1

The maximum parsimony phylogenetic tree reconstruction problem is NP-hard, presenting a computational bottleneck for classical computing and motivating the exploration of emerging…

cs.AI2025★ 7 cited

Enhancing Hepatopathy Clinical Trial Efficiency: A Secure, Large Language Model-Powered Pre-Screening Pipeline

Xiongbin Gui, Hanlin Lv, Xiao Wang +3

Background: Recruitment for cohorts involving complex liver diseases, such as hepatocellular carcinoma and liver cirrhosis, often requires interpreting semantically complex criteri…

physics.chem-ph2025★ 2 cited

Ultrafast photodissociation dynamics of dichloromethane on three-dimensional potential energy surfaces and its Coulomb explosion signature

Yijue Ding

We present efficient and reliable molecular dynamics simulations of the photodissociation of dichloromethane followed by Coulomb explosion. These simulations are performed by calcu…

cs.NE2020★ 8 cited

Evolving Neural Networks through a Reverse Encoding Tree

Haoling Zhang, Chao-Han Huck Yang, Hector Zenil +3

NeuroEvolution is one of the most competitive evolutionary learning frameworks for designing novel neural networks for use in specific tasks, such as logic circuit design and digit…