output
20122026
most citedSOAP3-dp: Fast, Accurate and Sensitive GPU-based Short Read Aligner

431 citations

46 papers

cs.NE2026

GemS-T: Multi-Dimensional Grouping for Ultra-High Energy Efficiency in Spiking Transformer

Zecheng Hao, Shenghao Xie, Kang Chen +3

Spiking Neural Networks (SNNs) offer superior energy efficiency over Artificial Neural Networks (ANNs). However, they encounter significant deficiencies in training and inference m…

physics.app-ph2026★ 3 cited

ATSim3.5D: A Multiscale Thermal Simulator for 3.5D-IC Systems based on Nonlinear Multigrid Method

Qipan Wang, Tianxiang Zhu, Yibo Lin +2

To resolve the rising temperatures in 3.5D-ICs, a thermal-aware design flow becomes increasingly crucial, necessitating an accurate and efficient thermal simulation tool. However,…

cond-mat.mtrl-sci2025★ 3 cited

Evidence of a two-dimensional nitrogen crystalline structure on silver surfaces

Xuegao Hu, Haijun Cao, Zhicheng Gao +11

Nitrogen, the most abundant element in Earth's atmosphere, exists as a diatomic gas under standard temperature and pressure. In the two-dimensional (2D) limit, atomically thin nitr…

physics.comp-ph2025★ 1 cited

Large Language Models as AI Agents for Digital Atoms and Molecules: Catalyzing a New Era in Computational Biophysics

Yijie Xia, Xiaohan Lin, Zicheng Ma +9

In computational biophysics, where molecular data is expanding rapidly and system complexity is increasing exponentially, large language models (LLMs) and agent-based systems are f…

q-bio.BM2025★ 9 cited

GPx4 is bound to peroxidized membranes by a hydrophobic anchor

Qingyang Hu, Hantian You, Kenan Li +2

Ferroptosis is a form of cell death discovered in recent years, induced by excessive peroxidation of phospholipids. Glutathione peroxidase 4 (GPx4) is an intracellular enzyme that…

math.NA2025★ 1 cited

Improved high-index saddle dynamics for finding saddle points and solution landscape

Hua Su, Haoran Wang, Lei Zhang +2

We present an improved high-index saddle dynamics (iHiSD) for finding saddle points and constructing solution landscapes, which is a crossover dynamics from gradient flow to tradit…