output
20092021
most citedAn expanded evaluation of protein function prediction methods shows an improvement in accuracy

457 citations

8 papers

q-bio.TO2021★ 87 cited

Universal scaling laws rule explosive growth inhuman cancers

Víctor M. Pérez-García, Gabriel F. Calvo, Jesús J. Bosque +24

Most physical and other natural systems are complex entities composed of a large number of interacting individual elements. It is a surprising fact that they often obey the so-call…

q-bio.QM2016★ 457 cited

An expanded evaluation of protein function prediction methods shows an improvement in accuracy

Yuxiang Jiang, Tal Ronnen Oron, Wyatt T Clark +144

Background: The increasing volume and variety of genotypic and phenotypic data is a major defining characteristic of modern biomedical sciences. At the same time, the limitations i…

q-bio.MN2015

Integrating epigenomic data and 3D genomic structure with a new measure of chromatin assortativity

Vera Pancaldi, Enrique Carrillo-de-Santa-Pau, Biola Maria Javierre +5

Network analysis is a powerful way of modeling chromatin interactions. Assortativity is a network property used in social sciences to identify factors affecting how people establis…

q-bio.PE2013★ 10 cited

A Boolean Gene Regulatory Model of heterosis and speciation

Peter M. F. Emmrich, Hannah E. Roberts, Vera Pancaldi

Modelling genetic phenomena affecting biological traits is important for the development of agriculture as it allows breeders to predict the potential of breeding for certain trait…

q-bio.GN2013★ 15 cited

Late-replicating CNVs as a source of new genes

David Juan, Daniel Rico, Tomas Marques-Bonet +2

Asynchronous replication of the genome has been associated with different rates of point mutation and copy number variation (CNV) in human populations. Here, we explored if the bia…

q-bio.MN2013★ 26 cited

Stress induces remodelling of yeast interaction and co-expression networks

Sonja Lehtinen, Francesc Xavier Marsellach, Sandra Codlin +6

Network analysis provides a powerful framework for the interpretation of genome-wide data. While static network approaches have proved fruitful, there is increasing interest in the…