3.9k citations · 5.9k across the 11 of their papers we have counts for
12 papers
A practical guide to the simultaneous determination of protein structure and dynamics using metainference
Thomas Löhr, Carlo Camilloni, Massimiliano Bonomi +1
Accurate protein structural ensembles can be determined with metainference, a Bayesian inference method that integrates experimental information with prior knowledge of the system…
A method for partitioning the information contained in a protein sequence between its structure and function
A. Possenti, M. Vendruscolo, C. Camilloni +1
Proteins employ the information stored in the genetic code and translated into their sequences to carry out well-defined functions in the cellular environment. The possibility to e…
An implementation of the maximum-caliber principle by replica-averaged time-resolved restrained simulations
Riccardo Capelli, Guido Tiana, Carlo Camilloni
Inferential methods can be used to integrate experimental informations and molecular simulations. The maximum entropy principle provides a framework for using equilibrium experimen…
Properties of low-dimensional collective variables in the molecular dynamics of biopolymers
R. Meloni, C. Camilloni, G. Tiana
The description of the dynamics of a complex, high-dimensional system in terms of a low-dimensional set of collective variables Y can be fruitful if the low dimensional representat…
Metainference: A Bayesian Inference Method for Heterogeneous Systems
Massimiliano Bonomi, Carlo Camilloni, Andrea Cavalli +1
Modelling a complex system is almost invariably a challenging task. The incorporation of experimental observations can be used to improve the quality of a model, and thus to obtain…
PLUMED 2: New feathers for an old bird
Gareth A. Tribello, Massimiliano Bonomi, Davide Branduardi +2
Enhancing sampling and analyzing simulations are central issues in molecular simulation. Recently, we introduced PLUMED, an open-source plug-in that provides some of the most popul…