145 citations
Counting papers with at most 25 authors, so collaboration author lists do not stand in for the people here.
- University of PalermoIT5 papers
- Bielefeld UniversityDE2 papers
- University of PisaIT2 papers
- Centrum Wiskunde & InformaticaNL1 paper
- Helsinki Institute for Information TechnologyFI1 paper
- Rutgers, The State University of New JerseyUS1 paper
- Universidade Federal de PernambucoBR1 paper
- University of HelsinkiFI1 paper
- Wellcome Sanger InstituteGB1 paper
3 papers · 1 filter
Lightweight LCP Construction for Next-Generation Sequencing Datasets
Markus J. Bauer, Anthony J. Cox, Giovanna Rosone +1
The advent of "next-generation" DNA sequencing (NGS) technologies has meant that collections of hundreds of millions of DNA sequences are now commonplace in bioinformatics. Knowing…
Adaptive reference-free compression of sequence quality scores
Lilian Janin, Giovanna Rosone, Anthony J. Cox
Motivation: Rapid technological progress in DNA sequencing has stimulated interest in compressing the vast datasets that are now routinely produced. Relatively little attention has…
Comparing DNA sequence collections by direct comparison of compressed text indexes
Anthony J. Cox, Tobias Jakobi, Giovanna Rosone +1
Popular sequence alignment tools such as BWA convert a reference genome to an indexing data structure based on the Burrows-Wheeler Transform (BWT), from which matches to individual…