12 citations · 12 across the 2 of their papers we have counts for
2 papers
q-bio.GN2014
BEETL-fastq: a searchable compressed archive for DNA reads
Lilian Janin, Ole Schulz-Trieglaff, Anthony J. Cox
Motivation: FASTQ is a standard file format for DNA sequencing data which stores both nucleotides and quality scores. A typical sequencing study can easily generate hundreds of gig…
q-bio.GN2013★ 12 cited
Comparing DNA sequence collections by direct comparison of compressed text indexes
Anthony J. Cox, Tobias Jakobi, Giovanna Rosone +1
Popular sequence alignment tools such as BWA convert a reference genome to an indexing data structure based on the Burrows-Wheeler Transform (BWT), from which matches to individual…