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20052019
most citedDynamics of DNA breathing in the Peyrard-Bishop model with damping and external force

41 citations

Showing physics.bio-phShow all

6 papers · 1 filter

physics.bio-ph2012

Modeling the interactions of biomatter and biofluid

A. Sulaiman, L. T. Handoko

The internal motions of biomatter immersed in biofluid are investigated. The interactions between the fragments of biomatter and its surrounding biofluid are modeled using field th…

physics.bio-ph2012★ 1 cited

Nonlinear conformation of secondary protein folding

M. Januar, A. Sulaiman, L. T. Handoko

A model to describe the mechanism of conformational dynamics in secondary protein based on matter interactions is proposed. The approach deploys the lagrangian method by imposing c…

physics.bio-ph2012★ 1 cited

The statistical properties of protein folding in the ϕ^4 theory

M. Januar, A. Sulaiman, L. T. Handoko

The statistical properties of protein folding within the ϕ^4 model are investigated. The calculation is performed using statistical mechanics and path integral method. In particula…

physics.bio-ph2011★ 41 cited

Dynamics of DNA breathing in the Peyrard-Bishop model with damping and external force

A. Sulaiman, F. P. Zen, H. Alatas +1

The impact of damping effect and external forces to the DNA breathing is investigated within the Peyrard-Bishop model. In in the continuum limit, the dynamics of the breathing of D…

physics.bio-ph2011★ 1 cited

Conformation changes and protein folding induced by ϕ^4 interaction

M. Januar, A. Sulaiman, L. T. Handoko

A model to describe the mechanism of conformational dynamics in protein based on matter interactions using lagrangian approach and imposing certain symmetry breaking is proposed. B…

physics.bio-ph2011★ 19 cited

The thermal denaturation of Peyrard-Bishop model with an external potential

A. Sulaiman, F. P. Zen, H. Alatas +1

The impact of various types of external potentials to the Peyrard-Bishop DNA denaturation is investigated through statistical mechanics approach. The partition function is obtained…