162 citations · 894 across the 45 of their papers we have counts for
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q-bio.BM2019★ 2 cited
Key biology you should have learned in physics class: Using ideal-gas mixtures to understand biomolecular machines
Daniel M. Zuckerman
The biological cell exhibits a fantastic range of behaviors, but ultimately these are governed by a handful of physical and chemical principles. Here we explore simple theory, know…
q-bio.BM2010★ 22 cited
Equilibrium Sampling in Biomolecular Simulation
Daniel M. Zuckerman
Equilibrium sampling of biomolecules remains an unmet challenge after more than 30 years of atomistic simulation. Efforts to enhance sampling capability, which are reviewed here, r…
q-bio.BM2007★ 24 cited
Annealed importance sampling of dileucine peptide
Edward Lyman, Daniel M. Zuckerman
Annealed importance sampling is a means to assign equilibrium weights to a nonequilibrium sample that was generated by a simulated annealing protocol. The weights may then be used…