162 citations · 894 across the 45 of their papers we have counts for
6 papers · 1 filter
A gentle introduction to the non-equilibrium physics of trajectories: Theory, algorithms, and biomolecular applications
Daniel M. Zuckerman, John D. Russo
Despite the importance of non-equilibrium statistical mechanics in modern physics and related fields, the topic is often omitted from undergraduate and core-graduate curricula. Key…
Accelerated estimation of long-timescale kinetics by combining weighted ensemble simulation with Markov model "microstates" using non-Markovian theory
Jeremy Copperman, Daniel Zuckerman
The weighted ensemble (WE) simulation strategy provides unbiased sampling of non-equilibrium processes, such as molecular folding or binding, but the extraction of rate constants r…
Transient probability currents provide upper and lower bounds on non-equilibrium steady-state currents in the Smoluchowski picture
Jeremy Copperman, David Aristoff, Dmitrii E. Makarov +2
Probability currents are fundamental in characterizing the kinetics of non-equilibrium processes. Notably, the steady-state current for a source-sink system can provide th…
Transition-Event Durations in One Dimensional Activated Processes
Bin W. Zhang, David Jasnow, Daniel M. Zuckerman
Despite their importance in activated processes, transition-event durations -- which are much shorter than first passage times -- have not received a complete theoretical treatment…
Asymmetric Primitive-Model Electrolytes: Debye-Huckel Theory, Criticality and Energy Bounds
Daniel M. Zuckerman, Michael E. Fisher, Stefan Bekiranov
Debye-Huckel (DH) theory is extended to treat two-component size- and charge-asymmetric primitive models, focussing primarily on the 1:1 additive hard-sphere electrolyte with, say,…
Critique of Primitive Model Electrolyte Theories
Daniel M. Zuckerman, Michael E. Fisher, Benjamin P. Lee
Approximate theories for the restricted primitive model electrolyte are compared in the light of Totsuji's lower bound for the energy (an improvement over Onsager's), Gillan's uppe…