96 citations · 135 across the 5 of their papers we have counts for
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q-bio.QM2024
Cell size distributions in lineages
Kaan Öcal, Michael P. H. Stumpf
Cells actively regulate their size during the cell cycle to maintain volume homeostasis across generations. While various mathematical models of cell size regulation have been prop…
q-bio.QM2022★ 10 cited
Model Reduction for the Chemical Master Equation: an Information-Theoretic Approach
K. Öcal, G. Sanguinetti, R. Grima
The complexity of mathematical models in biology has rendered model reduction an essential tool in the quantitative biologist's toolkit. For stochastic reaction networks described…
q-bio.QM2019★ 29 cited
Parameter estimation for biochemical reaction networks using Wasserstein distances
Kaan Öcal, Ramon Grima, Guido Sanguinetti
We present a method for estimating parameters in stochastic models of biochemical reaction networks by fitting steady-state distributions using Wasserstein distances. We simulate a…