activity
20132026
most citedModeling polypharmacy side effects with graph convolutional networks

1.5k citations · 6.9k across the 102 of their papers we have counts for

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Showing 2021Show all

10 papers · 1 filter

q-bio.OT2021★ 8 cited

Beyond Low Earth Orbit: Biomonitoring, Artificial Intelligence, and Precision Space Health

Ryan T. Scott, Erik L. Antonsen, Lauren M. Sanders +53

Human space exploration beyond low Earth orbit will involve missions of significant distance and duration. To effectively mitigate myriad space health hazards, paradigm shifts in d…

q-bio.QM2021

Sparse dictionary learning recovers pleiotropy from human cell fitness screens

Joshua Pan, Jason J. Kwon, Jessica A. Talamas +7

In high-throughput functional genomic screens, each gene product is commonly assumed to exhibit a singular biological function within a defined protein complex or pathway. In pract…

cs.LG2021★ 24 cited

Graph-Guided Network for Irregularly Sampled Multivariate Time Series

Xiang Zhang, Marko Zeman, Theodoros Tsiligkaridis +1

In many domains, including healthcare, biology, and climate science, time series are irregularly sampled with varying time intervals between successive readouts and different subse…

cs.LG2021★ 2 cited

Deep Contextual Learners for Protein Networks

Michelle M. Li, Marinka Zitnik

Spatial context is central to understanding health and disease. Yet reference protein interaction networks lack such contextualization, thereby limiting the study of where protein…

cs.LG2021★ 20 cited

Probing GNN Explainers: A Rigorous Theoretical and Empirical Analysis of GNN Explanation Methods

Chirag Agarwal, Marinka Zitnik, Himabindu Lakkaraju

As Graph Neural Networks (GNNs) are increasingly being employed in critical real-world applications, several methods have been proposed in recent literature to explain the predicti…

cs.LG2021★ 295 cited

Graph Representation Learning in Biomedicine

Michelle M. Li, Kexin Huang, Marinka Zitnik

Biomedical networks (or graphs) are universal descriptors for systems of interacting elements, from molecular interactions and disease co-morbidity to healthcare systems and scient…