activity
20032014
most citedReplica exchange molecular dynamics simulations of amyloid peptide aggregation

225 citations · 579 across the 19 of their papers we have counts for

collaborators

19 papers

physics.comp-ph2014

Accelerated kinetic over-relaxation for dynamic energy minimization in lattice many-body problems

Nasrollah Moradi, Andreas Greiner, Simone Melchionna +2

A kinetic over-relaxation minimizer, based on a lattice version of the Boltzmann equation is presented. The method is validated against standard Metropolis Monte Carlo, and proves…

quant-ph2013

Optimal, robust geometries for coherent excitation transport

Stefano Mostarda, Federico Levi, Diego Prada-Gracia +2

Coherent transport promises to be the basis for an emerging new technology. Notwithstanding, a mechanistic understanding of the fundamental principles behind optimal scattering med…

physics.chem-ph2013★ 1 cited

Temperature response of the polarizable SWM4-NDP water model

Roman Shevchuk, Francesco Rao

Introduction of polarizability in classical molecular simulations holds the promise to increase accuracy as well as prediction power to computer modeling. To introduce polarizabili…

physics.chem-ph2013

Rethinking hydrogen-bond kinetics

Diego Prada-Gracia, Francesco Rao

At the fundamental level, our understanding of water hydrogen-bond dynamics has been largely built on the detailed analysis of classical molecular simulations. The latter served to…

physics.chem-ph2013★ 79 cited

The quest for self-consistency in hydrogen-bond definitions

Diego Prada-Gracia, Roman Shevchuk, Francesco Rao

In the last decades several hydrogen-bond definitions were proposed by classical computer simulations. Aiming at validating their self-consistency on a wide range of conditions, he…

physics.bio-ph2013

Consensus for the Fip35 folding mechanism?

Ganna Berezovska, Diego Prada-Gracia, Francesco Rao

Recent advances in computational power and simulation programs finally delivered the first examples of reversible folding for small proteins with an all-atom description. But havin…