1 citations · 1 across the 2 of their papers we have counts for
6 papers
What one can learn from experiments about the elusive transition state?
Iksoo Chang, Marek Cieplak, Jayanth R. Banavar +1
We present the results of an exact analysis of a model energy landscape of a protein to clarify the notion of the transition state and the physical meaning of the values determ…
Thermal effects in stretching of Go-like models of titin and secondary structures
Marek Cieplak, Trinh Xuan Hoang, Mark O. Robbins
The effect of temperature on mechanical unfolding of proteins is studied using a Go-like model with a realistic contact map and Lennard-Jones contact interactions. The behavior of…
Prediction of Protein Secondary Structures From Conformational Biases
Trinh Xuan Hoang, Marek Cieplak, Jayanth R. Banavar +1
We use LINUS, a procedure developed by Srinivasan and Rose, to provide a physical interpretation of and to predict the secondary structures of proteins. The secondary structure typ…
Folding and Stretching in a Go-like Model of Titin
Marek Cieplak, Trinh Xuan Hoang, Mark O. Robbins
Mechanical stretching of the I27 domain of titin and of its double and triple repeats are studied through molecular dynamics simulations of a Go-like model with Lennard-Jones conta…
Thermal Folding and Mechanical Unfolding Pathways of Protein Secondary Structures
Marek Cieplak, Trinh Xuan Hoang, Mark O. Robbins
Mechanical stretching of secondary structures is studied through molecular dynamics simulations of a Go-like model. Force vs. displacement curves are studied as a function of the s…
Kinetic non-optimality and vibrational stability of proteins
Marek Cieplak, Trinh Xuan Hoang
Scaling of folding times in Go models of proteins and of decoy structures with the Lennard-Jones potentials in the native contacts reveal %robust power law trends when studied unde…