466 citations · 553 across the 25 of their papers we have counts for
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A semialgebraic description of the general Markov model on phylogenetic trees
Elizabeth S. Allman, John A. Rhodes, Amelia Taylor
Many of the stochastic models used in inference of phylogenetic trees from biological sequence data have polynomial parameterization maps. The image of such a map --- the collectio…
Tensor Rank, Invariants, Inequalities, and Applications
Elizabeth S. Allman, Peter D. Jarvis, John A. Rhodes +1
Though algebraic geometry over is often used to describe the closure of the tensors of a given size and complex rank, this variety includes tensors of both smaller and…
Species tree inference by the STAR method, and generalizations
Elizabeth S. Allman, James H. Degnan, John A. Rhodes
The multispecies coalescent model describes the generation of gene trees from a rooted metric species tree, and thus provides a framework for the inference of species trees from sa…
When Do Phylogenetic Mixture Models Mimic Other Phylogenetic Models?
Elizabeth S. Allman, John A. Rhodes, Seth Sullivant
Phylogenetic mixture models, in which the sites in sequences undergo different substitution processes along the same or different trees, allow the description of heterogeneous evol…