activity
20142026
most citedThe effect of gene flow on coalescent-based species-tree inference

9 citations · 29 across the 15 of their papers we have counts for

collaborators

17 papers

q-bio.PE2026

Semialgebraic Conditions for Identifying Triangles in Phylogenetic Networks

Bryan Currie, Aviva K. Englander, Jose A. Esparza-Lozano +7

An important consideration for a model-based method of phylogenetic network inference is the identifiability of the network parameter of the model. A recurring theme in previous wo…

q-bio.PE2023

Phylogenomic Models from Tree Symmetries

Elizabeth A. Allman, Colby Long, John A. Rhodes

A model of genomic sequence evolution on a species tree should include not only a sequence substitution process, but also a coalescent process, since different sites may evolve on…

q-bio.PE2022★ 2 cited

Statistical learning with phylogenetic network invariants

Travis Barton, Elizabeth Gross, Colby Long +1

Phylogenetic networks provide a means of describing the evolutionary history of sets of species believed to have undergone hybridization or gene flow during their evolution. The mu…

q-bio.PE2020★ 3 cited

Distinguishing level-1 phylogenetic networks on the basis of data generated by Markov processes

Elizabeth Gross, Leo van Iersel, Remie Janssen +3

Phylogenetic networks can represent evolutionary events that cannot be described by phylogenetic trees. These networks are able to incorporate reticulate evolutionary events such a…

q-bio.PE2019

Phylogenetic Networks

Elizabeth Gross, Colby Long, Joseph Rusinko

Phylogenetics is the study of the evolutionary relationships between organisms. One of the main challenges in the field is to take biological data for a group of organisms and to i…

q-bio.PE2018

Species tree inference from genomic sequences using the log-det distance

Elizabeth S. Allman, Colby Long, John A. Rhodes

The log-det distance between two aligned DNA sequences was introduced as a tool for statistically consistent inference of a gene tree under simple non-mixture models of sequence ev…