342 citations · 733 across the 10 of their papers we have counts for
10 papers
The EntOptLayout Cytoscape plug-in for the efficient visualization of major protein complexes in protein-protein interaction and signalling networks
Bence Agg, Andrea Csaszar, Mate Szalay-Beko +5
Motivation: Network visualizations of complex biological datasets usually result in 'hairball' images, which do not discriminate network modules. Results: We present the EntOptLayo…
A unified data representation theory for network visualization, ordering and coarse-graining
István A. Kovács, Réka Mizsei, Peter Csermely
Representation of large data sets became a key question of many scientific disciplines in the last decade. Several approaches for network visualization, data ordering and coarse-gr…
ModuLand plug-in for Cytoscape: determination of hierarchical layers of overlapping network modules and community centrality
Mate Szalay-Beko, Robin Palotai, Balazs Szappanos +3
Summary: The ModuLand plug-in provides Cytoscape users an algorithm for determining extensively overlapping network modules. Moreover, it identifies several hierarchical layers of…
Community landscapes: an integrative approach to determine overlapping network module hierarchy, identify key nodes and predict network dynamics
Istvan A. Kovacs, Robin Palotai, Mate S. Szalay +1
Background: Network communities help the functional organization and evolution of complex networks. However, the development of a method, which is both fast and accurate, provides…
Drug-therapy networks and the predictions of novel drug targets
Zoltan Spiro, Istvan A. Kovacs, Peter Csermely
Recently, a number of drug-therapy, disease, drug, and drug-target networks have been introduced. Here we suggest novel methods for network-based prediction of novel drug targets a…
Network analysis of protein dynamics
Csaba Bode, Istvan A. Kovacs, Mate S. Szalay +3
The network paradigm is increasingly used to describe the topology and dynamics of complex systems. Here we review the results of the topological analysis of protein structures as…