455 citations · 766 across the 17 of their papers we have counts for
4 papers · 1 filter
Sequence alignment and mutual information
Orion Penner, Peter Grassberger, Maya Paczuski
Background: Alignment of biological sequences such as DNA, RNA or proteins is one of the most widely used tools in computational bioscience. All existing alignment algorithms rely…
Reinforced walks in two and three dimensions
Jacob G. Foster, Peter Grassberger, Maya Paczuski
In probability theory, reinforced walks are random walks on a lattice (or more generally a graph) that preferentially revisit neighboring `locations' (sites or bonds) that have bee…
Reply to Comment on ``Analysis of the spatial distribution between successive earthquakes''
J. Davidsen, M. Paczuski
This is a reply to the Comment on ``Analysis of the spatial distribution between successive earthquakes'' by Maximilian Jonas Werner and Didier Sornette.
Avalanches, branching ratios, and clustering of attractors in Random Boolean Networks and in the segment polarity network of \emph{Drosophila}
Andrew Berdahl, Amer Shreim, Vishal Sood +2
We discuss basic features of emergent complexity in dynamical systems far from equilibrium by focusing on the network structure of their state space. We start by measuring the dist…