455 citations · 766 across the 17 of their papers we have counts for
4 papers · 1 filter
Complex Network Analysis of State Spaces for Random Boolean Networks
Amer Shreim, Andrew Berdahl, Vishal Sood +2
We apply complex network analysis to the state spaces of random Boolean networks (RBNs). An RBN contains Boolean elements each with inputs. A directed state space network (…
Node similarity within subgraphs of protein interaction networks
Orion Penner, Vishal Sood, Gabe Musso +3
We propose a biologically motivated quantity, twinness, to evaluate local similarity between nodes in a network. The twinness of a pair of nodes is the number of connected, labeled…
Graph animals, subgraph sampling and motif search in large networks
Kim Baskerville, Peter Grassberger, Maya Paczuski
We generalize a sampling algorithm for lattice animals (connected clusters on a regular lattice) to a Monte Carlo algorithm for `graph animals', i.e. connected subgraphs in arbitra…
Self-Organized Criticality and Intermittent Turbulence in an MHD Current Sheet with a Threshold Instability
Alexander J. Klimas, Vadim M. Uritsky, Maya Paczuski
We report numerical evidence of a self-organized criticality (SOC) and intermittent turbulence (IT) symbiosis in a resistive magnetohydrodynamic (MHD) current sheet model that incl…