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20022009
most citedARACNE: An Algorithm for the Reconstruction of Gene Regulatory Networks in a Mammalian Cellular Context

2.5k citations · 3.1k across the 16 of their papers we have counts for

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Showing 2007Show all

2 papers · 1 filter

physics.data-an2007★ 308 cited

A Bayesian Approach to Network Modularity

Jake M. Hofman, Chris H. Wiggins

We present an efficient, principled, and interpretable technique for inferring module assignments and for identifying the optimal number of modules in a given network. We show how…

q-bio.GN2007★ 26 cited

Motif Discovery through Predictive Modeling of Gene Regulation

Manuel Middendorf, Anshul Kundaje, Mihir Shah +3

We present MEDUSA, an integrative method for learning motif models of transcription factor binding sites by incorporating promoter sequence and gene expression data. We use a moder…