199 citations · 220 across the 4 of their papers we have counts for
4 papers
Time-dependent information transmission in a model regulatory circuit
Francesca Mancini, Chris H. Wiggins, Matteo Marsili +1
Many biological regulatory systems process signals out of steady state and respond with a physiological delay. A simple model of regulation which respects these features shows how…
Quantifying evolvability in small biological networks
Andrew Mugler, Etay Ziv, Ilya Nemenman +1
We introduce a quantitative measure of the capacity of a small biological network to evolve. We apply our measure to a stochastic description of the experimental setup of Guet et a…
Inferring Network Mechanisms: The Drosophila melanogaster Protein Interaction Network
Manuel Middendorf, Etay Ziv, Chris Wiggins
Naturally occurring networks exhibit quantitative features revealing underlying growth mechanisms. Numerous network mechanisms have recently been proposed to reproduce specific pro…
Discriminative Topological Features Reveal Biological Network Mechanisms
Manuel Middendorf, Etay Ziv, Carter Adams +6
Recent genomic and bioinformatic advances have motivated the development of numerous random network models purporting to describe graphs of biological, technological, and sociologi…