14 citations · 37 across the 10 of their papers we have counts for
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Polynomial Invariant of Molecular Circuit Topology
Alireza Mashaghi, Roland van der Veen
The topological framework of circuit topology has recently been introduced to complement knot theory and to help in understanding the physics of molecular folding. Naturally evolve…
Enhancement of the Coloring Invariant for Folded Molecular Chains
Jose Ceniceros, Mohamed Elhamdadi, Alireza Mashaghi
Folded linear molecular chains are ubiquitous in biology. Folding is mediated by intra-chain interactions that "glue" two or more regions of a chain. The resulting fold topology is…
Knot Theory for Proteins: Gauss Codes, Quandles and Bondles
Colin Adams, Judah Devadoss, Mohamed Elhamdadi +1
Proteins are linear molecular chains that often fold to function. The topology of folding is widely believed to define its properties and function, and knot theory has been applied…