6 citations · 6 across the 2 of their papers we have counts for
8 papers
Polynomial Invariant of Molecular Circuit Topology
Alireza Mashaghi, Roland van der Veen
The topological framework of circuit topology has recently been introduced to complement knot theory and to help in understanding the physics of molecular folding. Naturally evolve…
Circuit topology for bottom-up engineering of molecular knots
Anatoly Golovnev, Alireza Mashaghi
The art of tying knots is exploited in nature and occurs in multiple applications ranging from being an essential part of scouting programs to engineering molecular knots. Biomolec…
Enhancement of the Coloring Invariant for Folded Molecular Chains
Jose Ceniceros, Mohamed Elhamdadi, Alireza Mashaghi
Folded linear molecular chains are ubiquitous in biology. Folding is mediated by intra-chain interactions that "glue" two or more regions of a chain. The resulting fold topology is…
Knot Theory for Proteins: Gauss Codes, Quandles and Bondles
Colin Adams, Judah Devadoss, Mohamed Elhamdadi +1
Proteins are linear molecular chains that often fold to function. The topology of folding is widely believed to define its properties and function, and knot theory has been applied…
Statistical Physics of Medical Diagnostics: Study of a Probabilistic Model
Alireza Mashaghi, Abolfazl Ramezanpour
We study a diagnostic strategy which is based on the anticipation of the diagnostic process by simulation of the dynamical process starting from the initial findings. We show that…
Search efficiency of biased migration towards stationary or moving targets in heterogeneously structured environments
Youness Azimzade, Alireza Mashaghi
Efficient search acts as a strong selective force in biological systems ranging from cellular populations to predator-prey systems. The search processes commonly involve finding a…