388 citations · 679 across the 10 of their papers we have counts for
10 papers
Community-developed checklists for publishing images and image analysis
Christopher Schmied, Michael Nelson, Sergiy Avilov +51
Images document scientific discoveries and are prevalent in modern biomedical research. Microscopy imaging in particular is currently undergoing rapid technological advancements. H…
Dual-stream Multiple Instance Learning Network for Whole Slide Image Classification with Self-supervised Contrastive Learning
Bin Li, Yin Li, Kevin W. Eliceiri
We address the challenging problem of whole slide image (WSI) classification. WSIs have very high resolutions and usually lack localized annotations. WSI classification can be cast…
Pycro-manager: open-source software for integrated microscopy hardware control and image processing
Henry Pinkard, Nico Stuurman, Laura Waller
μManager, an open-source microscopy acquisition software, has been an essential tool for many microscopy experiments over the past 15 years, but is not easy to use for experiments…
Dual-stream Maximum Self-attention Multi-instance Learning
Bin Li, Kevin W. Eliceiri
Multi-instance learning (MIL) is a form of weakly supervised learning where a single class label is assigned to a bag of instances while the instance-level labels are not available…
Quantitative Histopathology of Stained Tissues using Color Spatial Light Interference Microscopy (cSLIM)
Hassaan Majeed, Adib Keikhosravi, Mikhail E. Kandel +6
Tissue biopsy evaluation in the clinic is in need of quantitative disease markers for diagnosis and, most importantly, prognosis. Among the new technologies, quantitative phase ima…
Spatially Adaptive Colocalization Analysis in Dual-Color Fluorescence Microscopy
Shulei Wang, Ellen T. Arena, Jordan T. Becker +4
Colocalization analysis aims to study complex spatial associations between bio-molecules via optical imaging techniques. However, existing colocalization analysis workflows only as…
Automated and Robust Quantification of Colocalization in Dual-Color Fluorescence Microscopy: A Nonparametric Statistical Approach
Shulei Wang, Ellen T. Arena, Kevin W. Eliceiri +1
Colocalization is a powerful tool to study the interactions between fluorescently labeled molecules in biological fluorescence microscopy. However, existing techniques for colocali…
ImageJ2: ImageJ for the next generation of scientific image data
Curtis T. Rueden, Johannes Schindelin, Mark C. Hiner +4
ImageJ is an image analysis program extensively used in the biological sciences and beyond. Due to its ease of use, recordable macro language, and extensible plug-in architecture,…
Structured Correlation Detection with Application to Colocalization Analysis in Dual-Channel Fluorescence Microscopic Imaging
Shulei Wang, Jianqing Fan, Ginger Pocock +1
Motivated by the problem of colocalization analysis in fluorescence microscopic imaging, we study in this paper structured detection of correlated regions between two random proces…
OpenSPIM - an open access platform for light sheet microscopy
Peter Pitrone, Johannes Schindelin, Luke Stuyvenberg +5
Light sheet microscopy promises to revolutionize developmental biology by enabling live in toto imaging of entire embryos with minimal phototoxicity. We present detailed instructio…