2 citations · 3 across the 2 of their papers we have counts for
4 papers
The Complexity of Approximate Pattern Matching on De Bruijn Graphs
Daniel Gibney, Sharma V. Thankachan, Srinivas Aluru
Aligning a sequence to a walk in a labeled graph is a problem of fundamental importance to Computational Biology. For finding a walk in an arbitrary graph with edges that exa…
Efficient Architecture-Aware Acceleration of BWA-MEM for Multicore Systems
Vasimuddin Md, Sanchit Misra, Heng Li +1
Innovations in Next-Generation Sequencing are enabling generation of DNA sequence data at ever faster rates and at very low cost. Large sequencing centers typically employ hundreds…
Cooperative neural networks (CoNN): Exploiting prior independence structure for improved classification
Harsh Shrivastava, Eugene Bart, Bob Price +3
We propose a new approach, called cooperative neural networks (CoNN), which uses a set of cooperatively trained neural networks to capture latent representations that exploit prior…
LightScan: Faster Scan Primitive on CUDA Compatible Manycore Processors
Yongchao Liu, Srinivas Aluru
Scan (or prefix sum) is a fundamental and widely used primitive in parallel computing. In this paper, we present LightScan, a faster parallel scan primitive for CUDA-enabled GPUs,…