15 citations · 54 across the 7 of their papers we have counts for
4 papers · 1 filter
Reaction-diffusion kinetics on lattice at the microscopic scale
Wei-Xiang Chew, Kazunari Kaizu, Masaki Watabe +3
Lattice-based stochastic simulators are commonly used to study biological reaction-diffusion processes. Some of these schemes that are based on the reaction-diffusion master equati…
Simulation of live-cell imaging system reveals hidden uncertainties in cooperative binding measurements
Masaki Watabe, Satya N. V. Arjunan, Wei Xiang Chew +2
We propose a computational method to quantitatively evaluate the systematic uncertainties that arise from undetectable sources in biological measurements using live-cell imaging te…
pSpatiocyte: A Parallel Stochastic Method for Particle Reaction-Diffusion Systems
Atsushi Miyauchi, Kazunari Iwamoto, Satya Nanda Vel Arjunan +1
Computational systems biology has provided plenty of insights into cell biology. Early on, the focus was on reaction networks between molecular species. Spatial distribution only b…
A computational framework for bioimaging simulation
Masaki Watabe, Satya N. V. Arjunan, Seiya Fukushima +6
Using bioimaging technology, biologists have attempted to identify and document analytical interpretations that underlie biological phenomena in biological cells. Theoretical biolo…