2 papers
math.OC2025
A convex approach for Markov chain estimation from aggregate data via inverse optimal transport
Michele Mascherpa, Axel Ringh, Amirhossein Taghvaei +1
We address the problem of identifying the dynamical law governing the evolution of a population of indistinguishable particles, when only aggregate distributions at successive time…
q-bio.QM2025
MultistageOT: Multistage optimal transport infers trajectories from a snapshot of single-cell data
Magnus Tronstad, Johan Karlsson, Joakim S. Dahlin
Single-cell RNA-sequencing captures a temporal slice, or a snapshot, of a cell differentiation process. A major bioinformatical challenge is the inference of differentiation trajec…