11 citations · 19 across the 3 of their papers we have counts for
4 papers
Ococo: an online variant and consensus caller
Karel Břinda, Valentina Boeva, Gregory Kucherov
Motivation: Identifying genomic variants is an essential step for connecting genotype and phenotype. The usual approach consists of statistical inference of variants from alignment…
Dynamic read mapping and online consensus calling for better variant detection
Karel Břinda, Valentina Boeva, Gregory Kucherov
Variant detection from high-throughput sequencing data is an essential step in identification of alleles involved in complex diseases and cancer. To deal with these massive data, e…
RNF: a general framework to evaluate NGS read mappers
Karel Břinda, Valentina Boeva, Gregory Kucherov
Aligning reads to a reference sequence is a fundamental step in numerous bioinformatics pipelines. As a consequence, the sensitivity and precision of the mapping tool, applied with…
Deciphering regulation in eukaryotic cell: from sequence to function
Valentina Boeva
A transversal topic of my research has been the development and application of computational methods for DNA sequence analysis. The methods I have been developing aim at improving…