2 citations · 3 across the 6 of their papers we have counts for
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Protein secondary structure prediction based on quintuplets
Wei-Mou Zheng
Simple hidden Markov models are proposed for predicting secondary structure of a protein from its amino acid sequence. Since the length of protein conformation segments varies in a…
Prediction of protein secondary structure based on residue pairs
Xin Liu, Li-mei Zhang, Wei-Mou Zheng
The GOR program for predicting protein secondary structure is extended to include triple correlation. A score system for a residue pair to be at certain conformation state is deriv…
Simplified amino acid alphabets based on deviation of conditional probability from random background
Xin Liu, Di Liu, Ji Qi +1
The primitive data for deducing the Miyazawa-Jernigan contact energy or BLOSUM score matrix consists of pair frequency counts. Each amino acid corresponds to a conditional probabil…
Distances and classification of amino acids for different protein secondary structures
Xin Liu, Li-mei Zhang, Shan Guan +1
Window profiles of amino acids in protein sequences are taken as a description of the amino acid environment. The relative entropy or Kullback-Leibler distance derived from profile…
Entropic Approach for Reduction of Amino Acid Alphabets
Wei-Mou Zheng
The primitive data for deducing the Miyazawa-Jernigan contact energy or BLOSUM score metrix are the pair frequency counts. Each amino acid corresponds to a distribution. Taking the…
Self-Organizing Approach for Finding Borders of DNA Coding Regions
Fang Wu, Wei-Mou Zheng
A self-organizing approach is proposed for gene finding based on the model of codon usage for coding regions and positional preference for noncoding regions. The symmetry between t…