2 citations · 2 across the 1 of their papers we have counts for
7 papers
On Weighted Simplicial Homology
Thomas J. X. Li, Christian M. Reidys
We develop a framework for computing the homology of weighted simplicial complexes with coefficients in a discrete valuation ring. A weighted simplicial complex, , introduce…
On an enhancement of RNA probing data using Information Theory
Thomas J. X. Li, Christian M. Reidys
Identifying the secondary structure of an RNA is crucial for understanding its diverse regulatory functions. This paper focuses on how to enhance target identification in a Boltzma…
The block spectrum of RNA pseudoknot structures
Thomas J. X. Li, Christina S. Burris, Christian M. Reidys
In this paper we analyze the length-spectrum of blocks in -structures. -structures are a class of RNA pseudoknot structures that plays a key role in the context of polynomial…
The rainbow-spectrum of RNA secondary structures
Thomas J. X. Li, Christian M. Reidys
In this paper we analyze the length-spectrum of rainbows in RNA secondary structures. A rainbow in a secondary structure is a maximal arc with respect to the partial order induced…
From unicellular fatgraphs to trees
Thomas J. X. Li, Christian M. Reidys
In this paper we study the minimum number of reversals needed to transform a unicellular fatgraph into a tree. We consider reversals acting on boundary components, having the natur…
Statistics of topological RNA structures
Thomas J. X. Li, Christian M. Reidys
In this paper we study properties of topological RNA structures, i.e.~RNA contact structures with cross-serial interactions that are filtered by their topological genus. RNA second…