193 citations · 237 across the 3 of their papers we have counts for
4 papers
A yield-cost tradeoff governs Escherichia coli's decision between fermentation and respiration in carbon-limited growth
Matteo Mori, Enzo Marinari, Andrea De Martino
Many microbial systems are known to actively reshape their proteomes in response to changes in growth conditions induced e.g. by nutritional stress or antibiotics. Part of the re-a…
Constrained Allocation Flux Balance Analysis
Matteo Mori, Terence Hwa, Olivier C. Martin +2
New experimental results on bacterial growth inspire a novel top-down approach to study cell metabolism, combining mass balance and proteomic constraints to extend and complement F…
Uniform sampling of steady states in metabolic networks: heterogeneous scales and rounding
Daniele De Martino, Matteo Mori, Valerio Parisi
The uniform sampling of convex polytopes is an interesting computational problem with many applications in inference from linear constraints, but the performances of sampling algor…
Counting and correcting thermodynamically infeasible flux cycles in genome-scale metabolic networks
Daniele De Martino, Fabrizio Capuani, Matteo Mori +2
Thermodynamics constrains the flow of matter in a reaction network to occur through routes along which the Gibbs energy decreases, implying that viable steady-state flux patterns s…