388 citations · 753 across the 8 of their papers we have counts for
8 papers
Tracking by weakly-supervised learning and graph optimization for whole-embryo C. elegans lineages
Peter Hirsch, Caroline Malin-Mayor, Anthony Santella +3
Tracking all nuclei of an embryo in noisy and dense fluorescence microscopy data is a challenging task. We build upon a recent method for nuclei tracking that combines weakly-super…
Software for Microscopy Workshop White Paper
Raghav Chhetri, Stephan Preibisch, Nico Stuurman
Microscopes have morphed from purely optical instruments into motorized, robotic machines that form images on digital sensors rather than eyeballs. This continuing trend towards au…
An automated workflow for parallel processing of large multiview SPIM recordings
Christopher Schmied, Peter Steinbach, Tobias Pietzsch +2
Multiview light sheet fluorescence microscopy (LSFM) allows to image developing organisms in 3D at unprecedented temporal resolution over long periods of time. The resulting massiv…
BigDataViewer: Interactive Visualization and Image Processing for Terabyte Data Sets
Tobias Pietzsch, Stephan Saalfeld, Stephan Preibisch +1
The increasingly popular light sheet microscopy techniques generate very large 3D time-lapse recordings of living biological specimen. The necessity to make large volumetric datase…
Efficient Bayesian-based Multi-View Deconvolution
Stephan Preibisch, Fernando Amat, Evangelia Stamataki +4
Light sheet fluorescence microscopy is able to image large specimen with high resolution by imaging the sam- ples from multiple angles. Multi-view deconvolution can significantly i…
OpenSPIM - an open access platform for light sheet microscopy
Peter Pitrone, Johannes Schindelin, Luke Stuyvenberg +5
Light sheet microscopy promises to revolutionize developmental biology by enabling live in toto imaging of entire embryos with minimal phototoxicity. We present detailed instructio…