31 citations · 93 across the 27 of their papers we have counts for
5 papers · 1 filter
The space of tree-based phylogenetic networks
Mareike Fischer, Andrew Francis
Phylogenetic networks are generalizations of phylogenetic trees that allow the representation of reticulation events such as horizontal gene transfer or hybridization, and can also…
Tree-metrizable HGT networks
Michael Hendriksen, Andrew Francis
Phylogenetic trees are often constructed by using a metric on the set of taxa that label the leaves of the tree. While there are a number of methods for constructing a tree using a…
How tree-based is my network? Proximity measures for unrooted phylogenetic networks
Mareike Fischer, Andrew Francis
Tree-based networks are a class of phylogenetic networks that attempt to formally capture what is meant by "tree-like" evolution. A given non-tree-based phylogenetic network, howev…
A partial order and cluster-similarity metric on rooted phylogenetic trees
Michael Hendriksen, Andrew Francis
Metrics on rooted phylogenetic trees are integral to a number of areas of phylogenetic analysis. Cluster-similarity metrics have recently been introduced in order to limit skew in…
A mean first passage time genome rearrangement distance
Andrew Francis, Henry Wynn
This paper introduces a new way to define a genome rearrangement distance, using the concept of mean first passage time from probability theory. Crucially, this distance estimate p…