188 citations · 834 across the 13 of their papers we have counts for
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q-bio.BM2017★ 43 cited
A nucleobase-centered coarse-grained representation for structure prediction of RNA motifs
Simón Poblete, Sandro Bottaro, Giovanni Bussi
We introduce the SPlit-and-conQueR (SPQR) model, a coarse-grained representation of RNA designed for structure prediction and refinement. In our approach, the representation of a n…
physics.bio-ph2017★ 14 cited
Effects and limitations of a nucleobase-driven backmapping procedure for nucleic acids using steered Molecular Dynamics
Simón Poblete, Sandro Bottaro, Giovanni Bussi
Coarse-grained models can be of great help to address the problem of structure prediction in nucleic acids. On one hand they can make the prediction more efficient, while on the ot…