188 citations · 834 across the 13 of their papers we have counts for
3 papers · 1 filter
Elastic network models for RNA: a comparative assessment with molecular dynamics and SHAPE experiments
Giovanni Pinamonti, Sandro Bottaro, Cristian Micheletti +1
Elastic network models (ENMs) are valuable and efficient tools for characterizing the collective internal dynamics of proteins based on the knowledge of their native structures. Th…
Kissing loop interaction in adenine riboswitch: insights from umbrella sampling simulations
Francesco Di Palma, Sandro Bottaro, Giovanni Bussi
Riboswitches are cis-acting regulatory RNA elements prevalently located in the leader sequences of bacterial mRNA. An adenine sensing riboswitch cis-regulates adeninosine deaminase…
Towards de novo RNA 3D structure prediction
Sandro Bottaro, Francesco Di Palma, Giovanni Bussi
RNA is a fundamental class of biomolecules that mediate a large variety of molecular processes within the cell. Computational algorithms can be of great help in the understanding o…