activity
20152026
most citedNanopore Sequencing Technology and Tools for Genome Assembly: Computational Analysis of the Current State, Bottlenecks and Future Directions

269 citations · 1.1k across the 57 of their papers we have counts for

collaborators
Showing 2020Show all

6 papers · 1 filter

cs.AR2020

SIMDRAM: A Framework for Bit-Serial SIMD Processing Using DRAM

Nastaran Hajinazar, Geraldo F. Oliveira, Sven Gregorio +7

Processing-using-DRAM has been proposed for a limited set of basic operations (i.e., logic operations, addition). However, in order to enable the full adoption of processing-using-…

cs.AR2020★ 27 cited

A Modern Primer on Processing in Memory

Onur Mutlu, Saugata Ghose, Juan Gómez-Luna +3

This paper discusses recent research that aims to enable computation close to data, an approach we broadly call processing-in-memory (PIM). PIM places computation mechanisms in or…

cs.AR2020★ 84 cited

Accelerating Genome Analysis: A Primer on an Ongoing Journey

Mohammed Alser, Zülal Bingöl, Damla Senol Cali +4

Genome analysis fundamentally starts with a process known as read mapping, where sequenced fragments of an organism's genome are compared against a reference genome. Read mapping i…

cs.AR2020★ 7 cited

FIGARO: Improving System Performance via Fine-Grained In-DRAM Data Relocation and Caching

Yaohua Wang, Lois Orosa, Xiangjun Peng +8

DRAM Main memory is a performance bottleneck for many applications due to the high access latency. In-DRAM caches work to mitigate this latency by augmenting regular-latency DRAM w…

cs.AR2020★ 2 cited

GenASM: A High-Performance, Low-Power Approximate String Matching Acceleration Framework for Genome Sequence Analysis

Damla Senol Cali, Gurpreet S. Kalsi, Zülal Bingöl +13

Genome sequence analysis has enabled significant advancements in medical and scientific areas such as personalized medicine, outbreak tracing, and the understanding of evolution. U…

cs.AR2020

The Virtual Block Interface: A Flexible Alternative to the Conventional Virtual Memory Framework

Nastaran Hajinazar, Pratyush Patel, Minesh Patel +7

Computers continue to diversify with respect to system designs, emerging memory technologies, and application memory demands. Unfortunately, continually adapting the conventional v…