101 citations · 463 across the 23 of their papers we have counts for
4 papers · 1 filter
Protein secondary structure prediction using deep convolutional neural fields
Sheng Wang, Jian Peng, Jianzhu Ma +1
Protein secondary structure (SS) prediction is important for studying protein structure and function. When only the sequence (profile) information is used as input feature, current…
Predicting diverse M-best protein contact maps
Siqi Sun, Jianzhu Ma, Sheng Wang +1
Protein contacts contain important information for protein structure and functional study, but contact prediction from sequence information remains very challenging. Recently evolu…
Protein Structure Prediction by Protein Alignments
Jianzhu Ma
Proteins are the basic building blocks of life. They usually perform functions by folding to a particular structure. Understanding the folding process could help the researchers to…
Bermuda: Bidirectional de novo assembly of transcripts with new insights for handling uneven coverage
Qingming Tang, Sheng Wang, Jian Peng +2
Motivation: RNA-seq has made feasible the analysis of a whole set of expressed mRNAs. Mapping-based assembly of RNA-seq reads sometimes is infeasible due to lack of high-quality re…