60 citations · 405 across the 30 of their papers we have counts for
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Uniform sampling of steady states in metabolic networks: heterogeneous scales and rounding
Daniele De Martino, Matteo Mori, Valerio Parisi
The uniform sampling of convex polytopes is an interesting computational problem with many applications in inference from linear constraints, but the performances of sampling algor…
Counting and correcting thermodynamically infeasible flux cycles in genome-scale metabolic networks
Daniele De Martino, Fabrizio Capuani, Matteo Mori +2
Thermodynamics constrains the flow of matter in a reaction network to occur through routes along which the Gibbs energy decreases, implying that viable steady-state flux patterns s…
Identifying all irreducible conserved metabolite pools in genome-scale metabolic networks: a general method and the case of Escherichia coli
A. De Martino, D. De Martino, R. Mulet +1
The stoichiometry of metabolic networks usually gives rise to a family of conservation laws for the aggregate concentration of specific pools of metabolites, which not only constra…