143 citations · 1.5k across the 45 of their papers we have counts for
6 papers · 1 filter
Diffusion-limited unbinding of small peptides from PDZ domains
Fabio Cecconi, Paolo De Los Rios, Francesco Piazza
PDZ domains are typical examples of binding motifs mediating the formation of protein-protein assemblies in many different cells. A quantitative characterization of the mechanisms…
Structural efficiency of percolation landscapes in flow networks
M. Angeles Serrano, Paolo De Los Rios
Complex networks characterized by global transport processes rely on the presence of directed paths from input to output nodes and edges, which organize in characteristic linked co…
Spectral Coarse Graining and Synchronization in Oscillator Networks
David Gfeller, Paolo De Los Rios
Coarse graining techniques offer a promising alternative to large-scale simulations of complex dynamical systems, as long as the coarse-grained system is truly representative of th…
Spectral coarse-graining of complex networks
David Gfeller, Paolo De los Rios
Reducing the complexity of large systems described as complex networks is key to understand them and a crucial issue is to know which properties of the initial system are preserved…
Discrete breathers in nonlinear network models of proteins
Brice Juanico, Yves-Henri Sanejouand, Francesco Piazza +1
We introduce a topology-based nonlinear network model of protein dynamics with the aim of investigating the interplay of spatial disorder and nonlinearity. We show that spontaneous…
Uncovering the topology of configuration space networks
David Gfeller, Paolo De Los Rios, David Morton de Lachapelle +2
The configuration space network (CSN) of a dynamical system is an effective approach to represent the ensemble of configurations sampled during a simulation and their dynamic conne…