143 citations · 508 across the 8 of their papers we have counts for
4 papers · 1 filter
Diffusion-limited unbinding of small peptides from PDZ domains
Fabio Cecconi, Paolo De Los Rios, Francesco Piazza
PDZ domains are typical examples of binding motifs mediating the formation of protein-protein assemblies in many different cells. A quantitative characterization of the mechanisms…
Spectral Coarse Graining and Synchronization in Oscillator Networks
David Gfeller, Paolo De Los Rios
Coarse graining techniques offer a promising alternative to large-scale simulations of complex dynamical systems, as long as the coarse-grained system is truly representative of th…
Spectral coarse-graining of complex networks
David Gfeller, Paolo De los Rios
Reducing the complexity of large systems described as complex networks is key to understand them and a crucial issue is to know which properties of the initial system are preserved…
Uncovering the topology of configuration space networks
David Gfeller, Paolo De Los Rios, David Morton de Lachapelle +2
The configuration space network (CSN) of a dynamical system is an effective approach to represent the ensemble of configurations sampled during a simulation and their dynamic conne…